Article: A blueprint for the spatiotemporal origins of mouse hippocampal interneuron diversity.
Full Text (publisher's website) ; Article Metadata ; Article Data (extracted) Tricoire L; Pelkey KA; Erkkila BE; Jeffries BW; Yuan X; McBain CJ J. Neurosci., 2011
Table 2.
Sequences of PCR primers
Marker | GenBank no. | First PCR primers | Size | Second PCR primers | Size |
---|---|---|---|---|---|
5HT3AR | NM_013561.2 | Sense, 889: TCAGACACACTGCCAGCAAC | 485 | Sense, 981: GACCATCTTCATTGTGCGGC | 337 |
(Htr3a) | Antisense, 1356: TATCCCACCCGCAGCCAG | Antisense, 1300: GAAGTGGCGGATGGAGGA | |||
CCK | NM_031161.3 | Sense, 16: TGTCTGTGCGTGGTGATGGC | 554 | Sense, 192: ATACATCCAGCAGGTCCGCAA | 237 |
Antisense, 546: GCATAGCAACATTAGGTCTGGGAG | Antisense, 408: CAGACATTAGAGGCGAGGGGT | ||||
CNP | NM_009923.2 | Sense, −52: CCCCGGAGACATAGTACCCGCAA | 437 | Sense, −22: GACGGCGGTGCGCCCACT | 318 |
Antisense, 364: GCTCCCGCTCGTGGTTGGTAT | Antisense, 275: GCCTCGGAGAAGTCTGCCCGA | ||||
CoupTFII | NM_009697.3 | Sense, 605: AGCCTAACAACATCATGGGC | 404 | Sense, 686: ACATCCCCTTCTTCCCTGAC | 318 |
(Nr2f2) | Antisense, 989: GCTTTCCACATGGGCTACAT | Antisense, 984: CCACATGGGCTACATCAGAC | |||
CR | NM_007586.1 | Sense, 63: TTGATGCTGACGGAAATGGGTA | 265 | Sense, 141: GCTGGAGAAGGCAAGGAAGG | 151 |
(Calb2) | Antisense, 327: CAAGCCTCCATAAACTCAGCG | Antisense, 271: ATTCTCTTCGGTCGGCAGGAT | |||
Enk | NM_001002927.2 | Sense, 92: CTAAATGCAGCTACCGCCTG | 407 | Sense, 119: CAGGCGACATCAATTTCCTG | 202 |
(Penk) | Antisense, 479: GTTGTCTCCCGTTCCCAGTA | Antisense, 301: TACCGTTTCATGAAGCCTCC | |||
GAD65 | NM_008078.2 | Sense, 99: CCAAAAGTTCACGGGCGG | 375 | Sense, 219: CACCTGCGACCAAAAACCCT | 248 |
(Gad2) | Antisense, 454: TCCTCCAGATTTTGCGGTTG | Antisense, 447: GATTTTGCGGTTGGTCTGCC | |||
GAD67 | NM_008077.4 | Sense, 83: ATGATACTTGGTGTGGCGTAGC | 253 | Sense, 159: CAATAGCCTGGAAGAGAAGAGTCG | 177 |
(Gad1) | Antisense, 314: GTTTGCTCCTCCCCGTTCTTAG | Antisense, 314: GTTTGCTCCTCCCCGTTCTTAG | |||
GFAP | NM_010277.3 | Sense, 523: AAGCCACCCTGGCTCGTGTG | 407 | Same as first PCR | 304 |
Antisense, 910: CTGTTCGCGCATTTGCCGCT | Antisense, 807: TTGGCTTGGCGGAGCAGCTC | ||||
Lhx6 | NM_008500.2 | Sense, 150: TGCCATGGCTCAGTCAGACGCA | 473 | Sense, 199: GACGAAGGTAGAGCCTCCCCATGT | 206 |
Antisense, 599: CCTTCTCCTCAACGAGGCCGAATT | Antisense, 383: TGCCTCAGCGATGTGCGACACA | ||||
MBPa | NM_010777.3 | Sense, 399: ATGGCATCACAGAAGAGACC | 354, 422, 442 | Same as first PCR | |
Antisense, 721: CATGGGAGATCCAGAGCGGC | 479, 574 | Same as first PCR | |||
NG2 | NM_139001.2 | Sense, 4841: CAGCACAGGCGCTGACCCTC | 408 | Sense, 4873: ACCGGGTGGTAAGAGGCCCC | 340 |
(Cspg4) | Antisense, 5229: TGCCGACTGCGCTGAGATGC | Antisense, 5193: AGGTTGGCGGCATCAAGGGC | |||
nNOS | NM_008712.2 | Sense, 1668: CCTGGGGCTCAAATGGTATG | 373 | Sense, 1742: CCTGTCCCTTTAGTGGCTGGTA | 236 |
(Nos1) | Antisense, 2021: CACAATCCACACCCAGTCGG | Antisense, 1957: GATGAAGGACTCGGTGGCAGA | |||
Npas1 | NM_008718.2 | Sense, 945: CATCCTTGCTTGTGAGAGCA | 436 | Sense, 1024: TTTGTTCATGGACAGGATGC | 227 |
Antisense, 1361: AGGGTCCTTGTCCTTGTCCT | Antisense, 1231: TCCAGGGGTGTTTGACTACC | ||||
Npas3 | NM_013780.2 | Sense, 730: GCCAGTTCAGCATCTTCCTC | 472 | Sense, 937: ATCATGGGTCTGGTGGTTGT | 204 |
Antisense, 1155: TCAGCAAGTCCAGGTGACTG | Antisense, 1121: TACATCTTCGGCATGGATGA | ||||
NPY | NM_023456.2 | Sense, 16: CGAATGGGGCTGTGTGGA | 297 | Sense, 38: CCCTCGCTCTATCTCTGCTCGT | 220 |
Antisense, 289: AAGTTTCATTTCCCATCACCACAT | Antisense, 236: GCGTTTTCTGTGCTTTCCTTCA | ||||
PV | NM_013645.3 | Sense, 104: GCCTGAAGAAAAAGAACCCG | 275 | Sense, 122: CGGATGAGGTGAAGAAGGTGT | 163 |
(Pvalb) | Antisense, 275: AATCTTGCCGTCCCCATCCT | Antisense, 265: TCCCCATCCTTGTCTCCAGC | |||
S100b | NM_009115.3 | Sense, 48: CAGTACTCCGGGCGAGAGGGT | 405 | Sense, 112: ACAACGAGCTCTCTCACTTCCTGG | 248 |
Antisense, 431: AGGGGGTTGGGGTTTCATCCCC | Antisense, 336: GCTGTGCCTCCTCTTGTGACCCTC | ||||
SOM | NM_009215.1 | Sense, 1: ATGCTGTCCTGCCGTCTCCA | 250 | Sense, 41: GCATCGTCCTGGCTTTGGG | 170 |
(Sst) | Antisense, 231: GCCTCATCTCGTCCTGCTCA | Antisense, 191: GGGCTCCAGGGCATCATTCT | |||
VGluT1 | NM_182993.2 | Sense, 597: CCCTTAGAACGGAGTCGGCT | 593 | Sense, 621: ACGACAGCCTTTTGCGGTTC | 367 |
(Slc17a7) | Antisense, 1169: TATCCGACCACCAGCAGCAG | Antisense, 968: CAAAGTAGGCGGGCTGAGAG | |||
VGluT3b | NM_182959.3 | Sense, 42: AGGAGTGAAGAATGCCGTGGGAGAC | 574 | Sense, 94: GATGGGACCAATGAAGAGGAAGAT | 384 |
(Slc17a8) | Antisense, 594: ACCCTCCACCAGACCCTGCAAA | Antisense, 453: TGAAATGAAGCCACCGGGAATTTGT | |||
VIP | NM_011702.2 | Sense, 219: TTATGATGTGTCAAGAAATGCCAG | 424 | Sense, 253: GGAGTTTTCACCAGCGATTACAG | 225 |
Antisense, 618: TTTTATTTGGTTTTGCTATGGAAG | Antisense, 455: CTCACTGCTCCTCTTTCCATTCA |
Inferred neuron-electrophysiology data values
Neuron Type | Neuron Description | Ephys Prop | Extracted Value | Standardized Value | Content Source |
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