Article: Identification and Characterization of MicroRNAs from Longitudinal Muscle and Respiratory Tree in Sea Cucumber (Apostichopus japonicus) Using High-Throughput Sequencing.

Full Text (publisher's website) ; Article Metadata ; Article Data (extracted)
Wang H; Liu S; Cui J; Li C; Hu Y; Zhou W; Chang Y; Qiu X; Liu Z; Wang X
PLoS ONE, 2015

10.1371/journal.pone.0134899.t003

Table 3 Novel miRNAs identified from the longitudinal muscle of sea cucumber.

Provisional ID	miRDeep2 score	Read counts	miRNA sequences	Consensus precursor sequence
Scaffold22_17	2.6e+3	5136	ugagguaguagguuauauagu	ugagguaguagguuauauaguuuggagauacacucaauggcgauagcuauacagccugcuagcuuucc
Scaffold759_623	2.5e+3	5003	agcugguaaacgggaaccaaau	agcugguaaacgggaaccaaaucgugaaguaaaugcggauuugguccccuucaaccagccgu
Scaffold912_690	1.7e+3	3527	ucacacacaaccacaggaaguu	cuuucuguggcugucguguuaagugugauucuaugaagacacuucacacacaaccacaggaaguu
Scaffold3711_1014	1.0e+2	201	caaaaaaucacugucggccacug	uggaagacuagugauuuuguuguugugaaugucaaagaacuaacaaaaaaucacugucggccacug
Scaffold2497_965	5.0e+1	97	caucgccaccaaguguacuuca	caucgccaccaaguguacuucaguggacauaugucguuuuuaaaucugagcacacuugguagcggu
Scaffold554_533	3.9e+1	75	cuugugcgugcgacagcgacu	uugcugucacgcggcacaagagagcaaucaugucuauacacucuugugcgugcgacagcgacu
Scaffold652_587	2.5	3210	ccaaggugugcuagugaugaca	cagucacuaccacaccuucgguggcuuuuuauagcuucaccaaggugugcuagugaugaca
Scaffold391_373	2.4	380	uauugcacucgucccggccu	gucgugaggaguugcaauuuguccacaugauaauaaucaucauauugcacucgucccggccu
Scaffold360_346	2.4	203	uugcauagucacaaaagugauu	ucauuuuuguguuuaugcaacuuuuguauuuucaccgaucagaguaguugcauagucacaaaagugauu
Scaffold391_377	2.4	308	uauugcacucgucccggcca	gucaggaugcuugcagugcuguggcuugcucgucuuaugacgagcaacacuaaagcuuucuuaguauugcacucgucccggcca
Scaffold823_655	2.4	72	ugcagcaugauguaguggugu	gccgcuacaucuaguugcauugugacgucuguuucagggaaaugcagcaugauguaguggugu
Scaffold1492_853	2.4	154	uuuguucguucggcucgcguca	gcacgagcucaacgugcaaaacuugagauaaggucagcuguucggcuggccgcuacaugcuguuuuguucguucggcucgcguca
Scaffold22_15	2.3	2488	ucccugagacccuaacuugu	ucccugagacccuaacuugugaugugcuuuuaucaaaucacacagguugguaucucaggaauu
Scaffold391_371	2.2	3404	uauugcacuugucccggccugc	aagucggaccgagcgcaauguuguuccucuauugagguuuuucgaauauugcacuugucccggccugc
Scaffold762_627	2.1	1855	uaauacugucuggugaugau	cauacuggacagcauuggacgugauuggaucguucucuaauacugucuggugaugau
Scaffold111_150	2.1	2935	uaguacuggcauauggacauug	uaguacuggcauauggacauuguuguaauaaucuuacucucaauguucaucuguccguacugcc
Scaffold191_220	2.1	3497	uuacuguugaugucagccccu	ggcugguuucuccaguaauuuguaucuucauuauagcaucaauuacuguugaugucagccccu
Scaffold97_135	2.0	12	aggcaagauguuggcauagc	aggcaagauguuggcauagcugugauuuaaauauuaacccagcugugucuucauacugccauu
Scaffold391_375	1.9	684	uauugcacuugucccggccu	gucgugacucgugcccaauauucaguguuacugcacaucaauauugcacuugucccggccu
Scaffold2335_956	1.8	14	uauuucaggcaguauacu	uauuucaggcaguauacugguaaaggguuuuauuugcaccauucuuaccuguugcuaccugaaauuaau
Scaffold47_56	1.8	14	uauuucaggcaguauacu	uauuucaggcaguauacugguaaaggguuuuauuugcaccauucuuaccuguugcuaccugaaauuaau
Scaffold365_353	1.7	152	uuauugcuugagaauacacgu	agguauucucgagugaauaauacagaaaagccugauguuauugcuugagaauacacgu
Scaffold39_50	1.4	319	ugaauacaucugcugguuu	accaacagguguuauucucaugugugauguacagaucugugaauacaucugcugguuu
Scaffold280_281	1.4	15927	ugaaagacauggguaguga	ugaaagacauggguagugagauuugacuaucacaaaacaaucucacuauucuguuuuucccc
Scaffold285_287	1.4	72	uaaggcacgcggugaaugc	guucacugugauccuugauuuauauucuaaaacaauuaaggcacgcggugaaugc
Scaffold838_659	1.2	3461	uggacggagaacugauaag	uaucauucucuugcccggccgaauacuauguuauugaaauugcgcuggacggagaacugauaag
Scaffold759_626	1.1	9549	uggaauguaaagaaguaug	uacuucuuuagaauuccauacugaaucuccucaacucuauggaauguaaagaaguaug

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Inferred neuron-electrophysiology data values

Neuron Type	Neuron Description	Ephys Prop	Extracted Value	Standardized Value	Content Source