AboutNeuron TypesElectrophysiology PropertiesArticlesFAQsData/APIGet Involved

Article: Identification and Characterization of MicroRNAs from Longitudinal Muscle and Respiratory Tree in Sea Cucumber (Apostichopus japonicus) Using High-Throughput Sequencing.

Full Text (publisher's website) ; Article Metadata ; Article Data (extracted)
Wang H; Liu S; Cui J; Li C; Hu Y; Zhou W; Chang Y; Qiu X; Liu Z; Wang X
PLoS ONE, 2015


10.1371/journal.pone.0134899.t004 Novel miRNA candidates identified from the respiratory tree of sea cucumber.
Provisional ID miRDeep2 score Read counts miRNA sequences Consensus precursor sequence
Scaffold22_117 6.0e+3 11832 ugagguaguagguuauauagu ugagguaguagguuauauaguuuggagauacacucaauggcgauagcuauacagccugcuagcuuucc
Scaffold912_2075 3.3e+3 6572 ucacacacaaccacaggaaguu cuuucuguggcugucguguuaagugugauucuaugaagacacuucacacacaaccacaggaaguu
Scaffold2497_3005 2.9e+3 5745 caucgccaccaaguguacuuca caucgccaccaaguguacuucaguggacauaugucguuuuuaaaucugagcacacuugguagcggu
Scaffold198_750 3.5e+2 688 ucuuugguuaucuagcuguaug ucuuugguuaucuagcuguaugagugaugucaaugcaucauaaagcuagguuaccaaagaua
Scaffold3711_3191 3.1e+2 625 caaaaaaucacugucggccacu uggaagacuagugauuuuguuguugugaaugucaaagaacuaacaaaaaaucacugucggccacu
Scaffold1492_2593 2.4e+2 485 uuuguucguucggcucgcguca cacgagcucaacgugcaaaacuugagauaaggucagcuguucggcuggccgcuacaugcuguuuuguucguucggcucgcguca
Scaffold360_1160 2.1e+2 414 uugcauagucacaaaagugauu ucauuuuuguguuuaugcaacuuuuguauuuucaccgaucagaguaguugcauagucacaaaagugauu
Scaffold365_1174 1.5e+2 303 cguauuaacaauguggcugaug cguauuaacaauguggcugaugaggaaucuuaugaaccaucagccucgcugucaauacga
Scaffold759_1903 1.2e+2 236 agcugguaaacgggaaccaaau agcugguaaacgggaaccaaaucgugaaguaaaugcggauuugguccccuucaaccagccgu
Scaffold1117_2260 6.1e+1 129 uaacggagaaucaggguucgauu cugcccuaucaacuuucgaugguacguuaugcgccuaccauggucgucacggguaacggagaaucaggguucgauu
Scaffold518_1542 6.1e+1 129 uaacggagaaucaggguucgauu cugcccuaucaacuuucgaugguacguuaugcgccuaccauggucgucacggguaacggagaaucaggguucgauu
Scaffold1239_2353 3.1 22 aucacgucgggaucacca gugaccccgacgugauucgaacacgcagccuucugauuuggagucagaaaguugcguguucggaucacgucgggaucacca
Scaffold652_1761 2.5 6455 ccaaggugugcuagugaugaca cagucacuaccacaccuucgguggcuuuuuauagcuucaccaaggugugcuagugaugaca
Scaffold391_1237 2.4 342 uauugcacucgucccggccugc uggucgugaggaguugcaauuuguccacaugauaauaaucaucauauugcacucgucccggccugc
Scaffold391_1241 2.4 106 uauugcacucgucccggcca gucaggaugcuugcagugcuguggcuugcucgucuuaugacgagcaacacuaaagcuuucuuaguauugcacucgucccggcca
Scaffold823_1975 2.4 23 ugcagcaugauguaguggu cgcuacaucuaguugcauugugacgucuguuucagggaaaugcagcaugauguaguggu
Scaffold22_115 2.3 1016 ucccugagacccuaacuugu ucccugagacccuaacuugugaugugcuuuuaucaaaucacacagguugguaucucaggaauu
Scaffold554_1605 2.3 581 cuugugcgugcgacagcgacu uugcugucacgcggcacaagagagcaaucaugucuauacacucuugugcgugcgacagcgacu
Scaffold391_1235 2.2 5223 uauugcacuugucccggccugc aagucggaccgagcgcaauguuguuccucuauugagguuuuucgaauauugcacuugucccggccugc
Scaffold191_722 2.1 3737 uuacuguugaugucagccccu ggcugguuucuccaguaauuuguaucuucauuauagcaucaauuacuguugaugucagccccu
Scaffold111_460 2.1 10733 uaguacuggcauauggacauug uaguacuggcauauggacauuguuguaauaaucuuacucucaauguucaucuguccguacugcc
Scaffold762_1911 2.1 74312 uaauacugucuggugaugau cauacuggacagcauuggacgugauuggaucguucucuaauacugucuggugaugau
Scaffold97_413 2.0 4027 aggcaagauguuggcauagc aggcaagauguuggcauagcugugauuuaaauauuaacccagcugugucuucauacugccauu
Scaffold98_416 2.0 18 aagcgggaucgggacgccgg ggcguuuaucgaucgccaugcuuacuacugcccgauuggcuuggcaagcgggaucgggacgccgg
Scaffold299_1022 2.0 181 uagcaccaugagaaagcagu uguuuucuauuggugcauagaguccuuguuuuacuucuucuagcaccaugagaaagcagu
Scaffold391_1239 1.9 529 uauugcacuugucccggccu gucgugacucgugcccaauauucaguguuacugcacaucaauauugcacuugucccggccu
Scaffold2335_2950 1.8 71 uauuucaggcaguauacu uauuucaggcaguauacugguaaaggguuuuauuugcaccauucuuaccuguugcuaccugaaauuaau
Scaffold47_222 1.8 71 uauuucaggcaguauacu uauuucaggcaguauacugguaaaggguuuuauuugcaccauucuuaccuguugcuaccugaaauuaau
Scaffold636_1736 1.7 604 aacccuguagauccgaauu aacccuguagauccgaauuuguguccgaguuucucgccucugguagucacagauucguaucucuggguaac
Scaffold285_985 1.4 27 uaaggcacgcggugaaugc guucacugugauccuugauuuauauucuaaaacaauuaaggcacgcggugaaugc
Scaffold39_194 1.4 417 ugaauacaucugcugguuu accaacagguguuauucucaugugugauguacagaucugugaauacaucugcugguuu
Scaffold280_975 1.4 15771 ugaaagacauggguaguga ugaaagacauggguagugagauuugacuaucacaaaacaaucucacuauucuguuuuucccc
Scaffold838_1989 1.2 16431 uggacggagaacugauaag uaucauucucuugcccggccgaauacuauguuauugaaauugcgcuggacggagaacugauaag
Scaffold759_1906 1.1 5735 uggaauguaaagaaguaug uacuucuuuagaauuccauacugaaucuccucaacucuauggaauguaaagaaguaug

Report miscurated data

Inferred neuron-electrophysiology data values

Neuron Type Neuron Description Ephys Prop Extracted Value Standardized Value Content Source