Article: CMT: a constrained multi-level thresholding approach for ChIP-Seq data analysis.
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Rezaeian I; Rueda L
PLoS ONE, 2014
10.1371/journal.pone.0093873.t003
Peak number, length and score comparison.
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| Dataset |
Method of Comparison |
CMT |
T-PIC |
MACS |
| FoxA1 |
Mean length of peaks |
277 |
303 |
373 |
|
Enrichment ratio |
2.39 |
2.42 |
1.83 |
| CAD |
Mean length of peaks |
476 |
818 |
507 |
|
Enrichment ratio |
0.92 |
0.88 |
0.93 |
| GT |
Mean length of peaks |
303 |
866 |
194 |
|
Enrichment ratio |
4.21 |
1.98 |
3.02 |
| HB1 |
Mean length of peaks |
365 |
920 |
429 |
|
Enrichment ratio |
2.03 |
1.57 |
1.80 |
| HB2 |
Mean length of peaks |
343 |
891 |
228 |
|
Enrichment ratio |
2.11 |
1.56 |
1.99 |
| KR1 |
Mean length of peaks |
517 |
728 |
492 |
|
Enrichment ratio |
1.91 |
1.83 |
1.95 |
| KR2 |
Mean length of peaks |
513 |
737 |
500 |
|
Enrichment ratio |
1.94 |
1.75 |
2.10 |
Comparison between CMT, MACS and T-PIC based on the number and mean length of detected peaks and enrichment score.
Inferred neuron-electrophysiology data values
| Neuron Type |
Neuron Description |
Ephys Prop |
Extracted Value |
Standardized Value |
Content Source |
