Article: CMT: a constrained multi-level thresholding approach for ChIP-Seq data analysis.
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Rezaeian I; Rueda L
PLoS ONE, 2014
10.1371/journal.pone.0093873.t008
Comparison of CMT, MACS and T-PIC, based on the percentage of detected regions that are associated with different genomic features.
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| Method |
Number of Regions |
Genes |
Exons |
Introns |
Promoters |
Inter-genetic Regions |
|
|
Regions |
% |
Regions |
% |
Regions |
% |
Regions |
% |
Regions |
% |
| MACS |
14,026 |
12,249 |
87.3 |
967 |
6.9 |
12,438 |
88.7 |
676 |
4.8 |
7,338 |
52.3 |
| T-PIC |
21,662 |
19,041 |
87.9 |
1,721 |
7.9 |
18,731 |
86.5 |
934 |
4.3 |
10,989 |
50.7 |
| CMT |
26,253 |
23,311 |
88.8 |
2,231 |
8.5 |
22,143 |
84.3 |
1,226 |
4.7 |
13,053 |
49.7 |
Inferred neuron-electrophysiology data values
| Neuron Type |
Neuron Description |
Ephys Prop |
Extracted Value |
Standardized Value |
Content Source |
