Table 1.
Target sequences for probes used in the NanoString analysis
| Gene name | Accession no. | Target sequence |
|---|---|---|
| Per1 | NM_011065.4 | CAGCTAGACTCCATTTTGGGGCCGCTTACAGCAGTCTAATGAGAGGCTTCCTTTCGACCATGTTGGGGTTCTTATAACTCAAGATACAGCTGGACCAACC |
| Per2 | NM_011066.3 | TGTAAATAAGCTCTCAGAGTTTGTGCGATGATGATTCGTGAGCCTTGCCGGACAAGAGGTTTGTTCATGCGCAAACCAAACGTACCTTCACCCAGTGCAA |
| Cry1 | NM_007771.3 | CGTGGAAGTCATCGTGCGCATTTCACATACACTGTATGACCTGGACAAGATCATAGAACTCAATGGCGGACAGCCACCTCTAACATATAAAAGGTTTCAG |
| Clock | NM_007715.5 | GTGTTGGTAGCTTTAGTGGGTCTGTGCCTGCATCAAATATTACAGAGGGCACACCACTGCCAGGGGTTTGCTTAGAATGCCATGAAGATAGTCCAGTAGT |
| Bmal1 | NM_007489.3 | CGGGTGAAATCTATGGAGTACGTTTCTCGACACGCAATAGATGGGAAATTTGTTTTTGTAGATCAGAGGGCGACAGCTATTTTGGCGTATCTACCACAGG |
| Rev-erbβ (Nr1d2) | NM_011584.3 | ATTGCCTACATCAGTTCCTCTAGCTCTGCCTCCAGCCCTGCCTCTTGTCACAGTGAGGGTTCTGAGAATAGCTTCCAGTCCTCGTCCTCGTCTGTTCCAT |
| Rev-erbα (Nr1d1) | NM_145434.2 | GCACACGTCTCTCTTTGCGTCCTGGTGCCTCATTTCTCCATCACCTACTTACTTCCTGGTTGCAGCTTCTCTTCCTTTGGGACTTTTGCACCCGGAGCTC |
| GAP-43 | NM_008083.2 | TACCACCATGCTGTGCTGTATGAGAAGAACCAAACAGGTTGAAAAGAATGATGAGGACCAAAAGATTGAACAAGATGGTGTCAAGCCGGAAGATAAGGCT |
| Bdnf-variant 1 | NM_007540.4 | CTTCTGTAGTCGCCAAGGTGGATGAGAGTTGAAGCTTTGCGGATATTGCGAAGGGTTATTAGATTCATAAGTCACACCAAGTGGTGGGCGATCCACTGAG |
| TrkB (Ntrk2) | NM_001025074.1 | AAGATCAAGATTCTGTGAACCTCACTGTGCATTTTGCGCCAACTATCACGTTTCTCGAGTCTCCAACCTCAGATCACCACTGGTGCATTCCATTCACTGT |
| Dbp | NM_016974.3 | AGGTGCTAATGACCTTTGAACCTGATCCCGCTGATCTCGCCCTGTCAAGCATTCCAGGCCATGAGACTTTTGACCCTCGGAGACACCGCTTCTCAGAGGA |
| Tef | NM_017376.2 | CCCTTTGGCCTTACATGTGTGTGTGTGCCTGTGCGAGTGTGTCCCTGCTGGTGGGCCGGAGTGATGTGTTATGGAGGGAAGTTGGGAATGTATCCTTTTC |
| Hlf | NM_172563.3 | TTCCACCAACCCCAGATAAGTAAGTACCATTCCTTATAGAACACAGAGTGTGTTTTGCACTGTCTGTACCTAAAGCAATAATCCTAGTGTACGCTAGAGC |
| Gria2 (AMPA2R) | NM_001039195.1 | GACCTCAAAATGCAGAGGATCTAATTTGCTGAGGAAAACGGTCAAAGAAGGAAAAGGAGGAAAGGGAAACGAGGGGATATTTTGTGGATGCTCTACTTTT |
| GABRg2 (GABA-AR) | NM_177408.5 | TTAGAACAAGAGCTGTTACACTGAGCAAGATACCTTTGAGCAACAGCAATGAAAACAGTGGAAGCTGGGAGGGTTTAAAGTGGCATTATCAGTCTTTGAC |
| cFos | NM_010234.2 | AGCTGGTGCATTACAGAGAGGAGAAACACGTCTTCCCTCGAAGGTTCCCGTCGACCTAGGGAGGACCTTACCTGTTCGTGAAACACACCAGGCTGTGGGC |
| Jun-B | NM_008416.1 | AACAGCCTTTCTATCACGACGACTCTTACGCAGCGGCGGGATACGGTCGGAGCCCTGGCAGCCTGTCTCTACACGACTACAAACTCCTGAAACCCACCTT |
| ERG-3 (Kcnh7) | NM_133207.2 | CACAGGAAGACCCGGATGTGGTAGTTATTGATTCTTCTAAACACAGCGATGACTCTGTGGCCATGAAGCACTTTAAGTCTCCCACGAAAGAAAGTTGCAG |
| Zif268 (Egr1) | NM_007913.5 | CGGCAGCAGCGCCTTCAATCCTCAAGGGGAGCCGAGCGAACAACCCTATGAGCACCTGACCACAGAGTCCTTTTCTGACATCGCTCTGAATAATGAGAAG |
| Housekeeping genes | ||
| Tubb | NM_009451.3 | CCCCTCAACACATGTACACACACACACACACTCCACCTTCTTAGATCTTGAAAATCCTTTCCTTTATGCCCTGTCCCTTCCCCAGCACTCCTGAACCATT |
| Trf1R | NM_011638.3 | CTGAACCAGTTCAAAACAGATATCAGGGATATGGGTCTAAGTCTACAGTGGCTGTATTCCGCTCGTGGAGACTACTTCCGTGCTACTTCTAGACTAACAA |
| HPRT | NM_013556.2 | TGCTGAGGCGGCGAGGGAGAGCGTTGGGCTTACCTCACTGCTTTCCGGAGCGGTAGCACCTCCTCCGCCGGCTTCCTCCTCAGACCGCTTTTTGCCGCGA |
| CyclophilinE (Ppie) | NM_019489.5 | AGTTCTTCCTGACCTGTGATAAGACAGATTGGCTGGACGGCAAGCATGTGGTATTTGGGGAGGTCACGGAAGGCCTGGATGTCTTGCGGCAGATCGAGGC |
| Gusb | NM_010368.1 | AATACGTGGTCGGAGAGCTCATCTGGAATTTCGCCGACTTCATGACGAACCAGTCACCGCTGAGAGTAATCGGAAACAAGAAGGGGATCTTCACTCGCCA |
| Eef1a1 | NM_010106.2 | TTCCCGAGGGTGGGGGAGAACGGTATATAAGTGCGGCAGTCGCCTTGGACGTTCTTTTTCGCAACGGGTTTGCCGTCAGAACGCAGGTGTTGTGAAAACC |